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Research Article|Online First, 100111

Transcriptomic and physiological analyses reveal temporal changes contributing to the delayed healing response to arterial injury in diabetic rats

  • Sampath Narayanan
    Affiliations
    Vascular Surgery, Department of Molecular Medicine and Surgery, Karolinska University Hospital and Karolinska Institutet, Stockholm, Sweden
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  • Samuel Röhl
    Affiliations
    Vascular Surgery, Department of Molecular Medicine and Surgery, Karolinska University Hospital and Karolinska Institutet, Stockholm, Sweden
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  • Mariette Lengquist
    Affiliations
    Vascular Surgery, Department of Molecular Medicine and Surgery, Karolinska University Hospital and Karolinska Institutet, Stockholm, Sweden
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  • Malin Kronqvist
    Affiliations
    Vascular Surgery, Department of Molecular Medicine and Surgery, Karolinska University Hospital and Karolinska Institutet, Stockholm, Sweden
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  • Author Footnotes
    ∗ Shared last authors
    Ljubica Matic
    Footnotes
    ∗ Shared last authors
    Affiliations
    Vascular Surgery, Department of Molecular Medicine and Surgery, Karolinska University Hospital and Karolinska Institutet, Stockholm, Sweden
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  • Author Footnotes
    ∗ Shared last authors
    Anton Razuvaev
    Correspondence
    Correspondence to: Anton Razuvaev, MD, PhD, Department of Molecular Medicine and Surgery, BioClinicum J8:20, Visionsgatan 4, Karolinska Institutet, SE-171 76 Stockholm, Sweden. Tel: +46-73-9624279; Fax: +46-8-313147.
    Footnotes
    ∗ Shared last authors
    Affiliations
    Vascular Surgery, Department of Molecular Medicine and Surgery, Karolinska University Hospital and Karolinska Institutet, Stockholm, Sweden
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  • Author Footnotes
    ∗ Shared last authors
Open AccessPublished:May 19, 2023DOI:https://doi.org/10.1016/j.jvssci.2023.100111

      Abstract

      Background

      Atherosclerosis is a leading cause of mortality in the rapidly growing population with diabetes mellitus. Vascular interventions in diabetic patients can lead to complications attributed to defective vascular remodeling and impaired healing response in the vessel wall. In this study, we aim to elucidate the molecular differences in the vascular healing response over time using a rat model of arterial injury applied to healthy and diabetic conditions.

      Methods and Results

      Wistar (healthy) and Goto-Kakizaki (GK, diabetic) rats (n = 40 per strain) were subjected to left common carotid artery (CCA) balloon injury and euthanized at different timepoints: 0 and 20 hours, 5 days, 2, 4 and 6 weeks. Non-invasive morphological and physiological assessment of the CCA was performed with Ultrasound biomicroscopy (Vevo 2100) and corroborated with histology. Total RNA was isolated from the injured CCA at each timepoint, and microarray profiling was performed (n=3 rats per timepoint, RaGene-1_0-st-v1 platform). Bioinformatic analyses were conducted using R software, DAVID bioinformatic tool, online STRING database and Cytoscape software.
      Significant increase in the neointimal thickness (p<0.01; 2-way ANOVA) as well as exaggerated negative remodeling was observed after 2 weeks of injury in GK compared to heathy rats, which was confirmed by histological analyses. Bioinformatic analyses showed defective expression patterns for smooth muscle cells and immune cell markers, along with reduced expression of key extracellular matrix (ECM) related genes and increased expression of pro-thrombotic genes, indicating potential faults on cell regulation level. Transcription factor – protein-protein interaction (TF-PPI) analysis provided mechanistic evidence with an array of transcription factors dysregulated in diabetic rats.

      Conclusions

      In this study, we have demonstrated that diabetic rats exhibit impaired arterial remodeling characterized by a delayed healing response. We show that increased contractile SMC marker expression coincided with decreased matrix metalloproteinase (MMP) expression, indicating a potential mechanism for a lack of ECM reorganization in the impaired vascular healing in GK rats.
      These results further corroborate the higher prevalence of restenosis in diabetic patients and provide vital molecular insights into the mechanisms contributing to the impaired arterial healing response in diabetes. Moreover, the presented study provides the research community with the valuable longitudinal gene expression data bank for further exploration of diabetic vasculopathy.

      Clinical relevance

      Vascular interventions causes injury to the arterial wall which in turn induces a healing response to restore vessel wall homeostasis. However, in diabetic patients, such interventions lead to exaggerated healing response and defective remodeling. There is a need to understand the molecular mechanisms underlying the defective healing response in diabetes. In this study, ultrasound biomicroscopy, histology and microarray profiling were used to demonstrate the transcriptional and physiological changes at various timepoints following arterial injury in healthy Wistar and diabetic GK rats. This study also provides a database of longitudinal transcriptional changes for the research community to study vascular healing in diabetes.

      Keywords

      Introduction

      The epidemic of diabetes mellitus (DM) is increasing worldwide, and DM is an independent risk factor for morbidity and mortality associated with cardiovascular disease (CVD)
      • Yahagi K.
      • et al.
      Pathology of Human Coronary and Carotid Artery Atherosclerosis and Vascular Calcification in Diabetes Mellitus.
      ,
      • Cordero A.
      • et al.
      Comparison of Long-Term Mortality for Cardiac Diseases in Patients With Versus Without Diabetes Mellitus.
      . Prevalence of DM increases cardiovascular risk by 3- to 8-fold and more than 30% of patients with acute myocardial infarction (MI) have diabetes.
      • Giacco F.
      • Brownlee M.
      Oxidative stress and diabetic complications.
      Vascular interventions in diabetic patients are prone to an increased risk of restenosis. Restenosis is a re-narrowing of the blood vessel caused by an excessive intimal hyperplastic response along with an impaired vascular remodeling. In addition, proinflammatory cytokines such as IL-1β, TNF-α and IL6 in diabetic patients, induce the phenotype switching of SMCs from contractile to synthetic phenotype
      • Wilson S.
      • et al.
      Diabetes and restenosis.
      • Chamberlain J.
      • et al.
      Interleukin-1β and Signaling of Interleukin-1 in Vascular Wall and Circulating Cells Modulates the Extent of Neointima Formation in Mice.
      • Qu D.
      • Liu J.
      • Lau C.W.
      • Huang Y.
      IL‐6 in diabetes and cardiovascular complications.
      • Niemann-Jӧnsson A.
      • et al.
      Increased Rate of Apoptosis in Intimal Arterial Smooth Muscle Cells Through Endogenous Activation of TNF Receptors.
      . Despite the use of drug eluting stents, diabetic patients still have an increased risk of in-stent restenosis and late stent thrombosis
      • Daemen J.
      • et al.
      Early and late coronary stent thrombosis of sirolimus-eluting and paclitaxel-eluting stents in routine clinical practice: data from a large two-institutional cohort study.
      . It is important to understand the molecular changes occurring during intimal hyperplasia in diabetes in order to design new strategies to prevent restenosis in diabetic patients.
      The major effects of uncontrolled hyperglycemia and insulin resistance in diabetes are manifested as microvascular and macrovascular complications. In large arteries, veins and in the heart, increased release of free fatty acids from insulin resistant adipocytes results in increased reactive oxygen species (ROS) production and dysfunction of endothelial cells, leading to atherogenesis
      • Giacco F.
      • Brownlee M.
      Oxidative stress and diabetic complications.
      . In addition to endothelial dysfunction, prolonged hyperglycemia can induce nonenzymatic glycation of the reactive side chains of amino acid lysine on various proteins resulting in advanced glycation end products (AGE). Studies have shown that a receptor for AGE (RAGE) activates inflammatory pathways in several vascular cells such as smooth muscle cells (SMC), endothelial cells (EC) and macrophages, creating an atherogenic microenvironment
      • Schmidt A.M.
      • Yan S.D.
      • Wautier J.-L.
      • Stern D.
      Activation of Receptor for Advanced Glycation End Products.
      .
      The rat common carotid artery (CCA) balloon injury model is a commonly used experimental model to study intimal hyperplasia and restenosis. The model involves a mechanical stretch injury of the arterial wall and denudation of the endothelial lining of the CCA, which induces a healing response characterized by VSMC proliferation, ECM accumulation and rapid reendothelialization
      • Tulis D.A.
      Rat carotid artery balloon injury model.
      . Using this model, we have previously shown that vascular injury induces dynamic changes to the transcriptomic landscape in the vessel wall and revealed novel mechanisms contributing to healing in male Sprague Dawley rats
      • PhD S.R.M.
      • et al.
      Transcriptomic profiling of experimental arterial injury reveals new mechanisms and temporal dynamics in vascular healing response.
      . The GK rats are a non-obese insulin resistant model of type 2 diabetes produced by selective inbreeding for a hyperglycemic phenotype
      • GOTO Y.
      • KAKIZAKI M.
      • MASAKI N.
      Production of Spontaneous Diabetic Rats by Repetition of Selective Breeding.
      . Since the GK rats were selected for highest normal blood glucose levels, it is important to point out that they represent an ideal model of type 2 diabetes with impaired glucose-stimulated insulin secretion (GSIS) attributed to a polygenic inheritance
      • Östenson C.‐G.
      • Efendic S.
      Islet gene expression and function in type 2 diabetes; studies in the Goto‐Kakizaki rat and humans.
      . These rats are characterized by normal circulating insulin levels, but a moderate increase in blood glucose levels resulting from insulin resistance, recapitulating the pathophysiology of human diabetic condition
      • Portha B.
      • et al.
      The GK rat beta-cell: A prototype for the diseased human beta-cell in type 2 diabetes?.
      . Previously, we had incorporated Ultrasound biomicroscopy (US) into the balloon injury model in GK rats to study vessel wall healing in diabetes
      • Eriksson L.
      • et al.
      Effects of Linagliptin on Vessel Wall Healing in the Rat Model of Arterial Injury Under Normal and Diabetic Conditions.
      .
      Here, we aimed to combine US imaging, histology, and microarray analysis to systematically study the physiological and molecular changes throughout the healing of the vessel wall in diabetic environment. We compared the transcriptomic profiles of injured arteries from healthy Wistar rats and diabetic GK rats to identify differentially expressed genes, altered pathways and transcriptional changes along each timepoint throughout the healing process.

      Materials and Methods

      Animals and study design

      Male Wistar were purchased from Charles River (Scanbur Research A/S, Sollentuna, Sweden) and Goto-Kakizaki (GK) rats were bred in-house (generously provided by Prof Claes-Göran Östenson, Karolinska Institutet) were housed in enriched cages at the animal facility and were constantly monitored by professional animal caretakers. The rats (n=40 for Wistar and n=40 for GK) were subjected to left common carotid artery balloon injury using 2F Fogarty balloons as previously described
      • PhD S.R.M.
      • et al.
      Transcriptomic profiling of experimental arterial injury reveals new mechanisms and temporal dynamics in vascular healing response.
      and euthanized and different time points (uninjured, 0 hours, 20 hours, 5 days, 2 weeks, 4 weeks and 6 weeks) after surgery (6-10 rats per timepoint). The timepoints for euthanasia and analysis was selected based on the previous study performed in Sprague-Dawley rats
      • PhD S.R.M.
      • et al.
      Transcriptomic profiling of experimental arterial injury reveals new mechanisms and temporal dynamics in vascular healing response.
      , where they represent the early, intermediate and late phases of healing in a normal rat vessel.
      Non-invasive morphological assessment was performed using Ultrasound biomicroscopy (US) (Vevo 2100, Fujifilms, Visualsonics Inc, Toronto, Canada; probes: 30-70 MHz, MS700) at 2-, 4- and 6-weeks post-surgery. The US image analysis was performed using an offline imaging software (Vevolab 1.7). US images were used to measure lumen and total vessel diameter as described previously by Röhl et al
      • Röhl S.
      • et al.
      Noninvasive in vivo Assessment of the Re‐endothelialization Process Using Ultrasound Biomicroscopy in the Rat Carotid Artery Balloon Injury Model.
      .
      Upon euthanization, both the injured and uninjured (contralateral right common carotid artery) vessels were used for microarray and histological analyses. All animal experiments were approved by the Stockholm Ethical Board (Dnr N181/16; N137/14) and institutional guidelines for proper animal care were followed.

      RNA extraction

      RNA was extracted using Qiazol Lysis Reagent (#79306, Qiagen, Hilden, Germany) and purified using the miRNeasy Mini kit (#217004, Qiagen). The RNA concentration was determined using the Nanodrop ND-1000 (Thermo Scientific, Waltham, MA) and the RNA quality was estimated using a Bioanalyzer capillary electrophoresis system (Agilent Technologies, Santa Clara, CA). Total RNA of appropriate quality and integrity (RIN: 8.0-9.8, A260/280: 2.0-2.1, A260/230: 0.3-2.0) was used for microarray profiling with Affymetrix GeneTitan Rat Gene ST v1 arrays.

      Histology

      Carotid arteries were fixed in 4% Zinc-formaldehyde for 24 hours and dehydrated in 70% ethanol. Then the tissues were embedded in paraffin blocks. 5μm sections were obtained using a microtome. The sections were deparaffinized using Histolab Clear and rehydrated in gradually decreasing concentrations of ethanol. After washing, the sections were treated with Bouin’s solution (Sigma-Aldrich). The slides were stained with Weigert’s iron hemotoxylin (1:1) (Histolab), washed and stained with Biebrich’s scarlet-fuschin solution (Sigma-Aldrich). After washing, the sections were stained with phosphomolybdic-phosphotungstic acid solution (1:1+2 volumes of distilled water) (Sigma-Aldrich) and then with Aniline Blue. The sections were washed with 1% acetic acid and dehydrated using increasing concentrations of ethanol. The sections were mounted using Pertex (Histolab) and scanned in an automated SlideScanner system (Scanscope CS).

      Bioinformatic analysis

      a. Analysis of the microarray data

      Robust multi-array average normalization and batch effect correction of the microarray dataset was performed, and processed gene expression data was returned in log2-scale. Principal component analysis (PCA) was performed using the R software (https://www.r-project.org/). The data was centered and scaled and PCA was calculated. Differential gene expression analysis was performed using a 2-sided multiple t-tests (assuming equal variances), by comparing Wistar and GK rats for each timepoint. The statistically significant changes in gene expression at each timepoint was represented by a volcano plot. Genes important for vascular healing among the top 20 differentially up- and down-regulated genes were indicated on the volcano plot.

      b. Pathway analysis

      Pathway analysis was performed using The Database for Annotation, Visualization, and Integrated Discovery (DAVID) online bioinformatic tool (https://david.ncifcrf.gov/). Briefly, a list of up/down regulated genes from each timepoint was used to generate gene ontology (GO)-biological processes (BP) with an EASE score of 0.0001 and gene count for each pathway of 5. The resulting list of pathways were filtered with dispensability less than 0.3.

      c. Transcription factor-protein-protein interaction analysis

      Transcription factor protein-protein interaction (TF-PPI) analysis was performed using the web-based Enrichr (https://maayanlab.cloud/Enrichr/) and STRING (https://string-db.org/) databases. Significantly up- and down-regulated genes from the pathway analysis were fed into Enrichr to obtain TF-PPIs for each timepoint. The top 10 significantly up- and down-regulated transcription factors from Enrichr were used to generate PPI network using the STRING database. These networks were imported to Cytoscape software (version 3.9.0), where the styles of the nodes were modified according to p-value and direction of fold change.

      Results

      Diabetic rats exhibit impaired vascular healing response

      Morphological and physiological changes in response to carotid balloon injury in GK and Wistar rats were assessed by US. We observed that 7 arteries from Wistar and 10 arteries from GK rats thrombosed in total at the end of the experiment. The vessel diameter of the intact arteries was significantly smaller in GK rats, as expected, since they correlate with the body weight
      • Krejza J.
      • et al.
      Carotid Artery Diameter in Men and Women and the Relation to Body and Neck Size.
      (Supplementary figure 2A). However, the loss of the total vessel diameter was significantly more pronounced in diabetic animals compared to Wistar rats, indicating negative remodeling in these animals at 2, 4 and 6 weeks (Figure 2A ). The intima-media thickness was significantly increased in GK rats compared to Wistar at 4 weeks after injury (Figure 2B). In parallel with stabilization of the vessel diameter, we could see continuous regrowth of the endothelial layer in Wistar rats.
      Figure thumbnail gr1
      Figure 1Workflow of the carotid balloon injury model and downstream analysis. (A) Balloon catheter injury was performed on the left common carotid artery of Wistar and Goto-Kakizaki (GK) rats and animals were euthanized at different time points post-surgery (0 and 20 hours, 5 days, 2, 4 and 6 weeks) (n = 6-10 for each strain and for each time point). Non-invasive Ultrasound biomicroscopy was conducted at 2, 4 and 6 weeks after injury for morphological and physiological evaluation. At all timepoints, microarray profiling and histological analysis was performed. (B) Representative images from Ultrasound biomicroscopy analysis of Wistar and GK rat CCA at 6 weeks. The far-wall portion of the artery has been enlarged for illustration. Arrows indicate 1) lumen-intimal interface, 2) intima-media interface, 3) media-adventitia interface. CCA, common carotid artery; ECA, external carotid artery; ICA, internal carotid artery.
      Figure thumbnail gr2
      Figure 2Diabetic rats exhibit impaired vascular healing response following carotid balloon injury. The healing of the artery wall was measured using an ultrahigh-frequency ultrasound system. Vessel diameter (A) was smaller in uninjured GK rats and was significantly decreased at 2, 4 and 6 weeks and neointima thickness (B) was significantly increased at 2 and 4 weeks in GK rats compared to Wistar rats. Neointima thickness was also significantly increased at 4 weeks compared to 2 weeks within Wistar and GK rat vessels. Statistical analysis between Wistar and GK at each timepoint was performed using non-parametric Mann-Whitney test, *, p < 0.05; **, p < 0.01; ***, p < 0.001; ****, p < 0.0001. (C) Representative images for Masson-trichrome staining illustrate an increase in the intimal hyperplasia in GK rats compared to Wistar rats during the late phase of vascular healing (2-6 weeks). Scale bar, 500μm.
      Histological analysis using Masson-trichrome staining, confirmed that the neointimal thickness was greater in GK rats at 2, 4 and 6 weeks (Figure 2D and Supplementary figure 1). Taken together, these results indicate that vascular wall healing is impaired in GK rats.

      Transcriptomic changes in response to vascular injury in diabetic rats

      The global gene expression profiles of Wistar and GK rats from each time point were compared individually in a principal component analysis (PCA). The PCA plot showed that only about 28% of the variations in gene expression between the groups were explained by the first 2 principal components (Figure 3A), indicating that the variation in the data is more complex. The first 2 principal components did not separate the expression profiles of uninjured and injured vessels at 0 hours in both Wistar and GK rats. However, the expression profiles could be grouped into early, intermediate and late phases of healing by PCA analysis, as previously reported
      • PhD S.R.M.
      • et al.
      Transcriptomic profiling of experimental arterial injury reveals new mechanisms and temporal dynamics in vascular healing response.
      . The intermediate phase profile was prominently distinct from the early and late phases of vascular healing. In the late phase of healing, the expression profiles approached closer to the earlier time points, indicating the achievement of global equilibrium in gene expression towards the end of healing in the vessels. Interestingly, the gene expression profiles of GK and Wistar differed clearly at 4 weeks after injury.
      Figure thumbnail gr3
      Figure 3Transcriptomic changes in response to vascular injury in GK rats. (A) Principal component analysis (PCA) of global gene expression profiles of Wistar and GK rats, showing intact and injured vessels collected at early (0 hours), intermediate (20 hours and 5 days) and late phases (2, 4 and 6 weeks) of healing after injury. The timepoints are marked in the colors corresponding to the datapoints. (B) Volcano plots showing differential gene expression comparing Wistar vs GK rats in uninjured and injured vessels through alternate time points (20 hours, 2 and 6 weeks) during the course of vascular healing. Selected up- and down-regulated genes are highlighted in each plot. The dashed lines represent the nominal p-value threshold (p = 0.05).
      To further analyze the transcriptomic differences between the groups, differential gene expression comparing Wistar and GK rats was performed for each time point as visualized by volcano plots (Figure 3B, Supplementary figure 3 and Supplementary data 1). GK rats upregulated genes involved in glucose (Glp1r) and fatty acid metabolism (Thrsp, Fabp4) immediately following injury (0 hour), while key immune response molecules such as Pla2g2a, Icoslg, Ccl2 and Ccl3 were downregulated. Genes related to coagulation and cell adhesion were upregulated only at 20 hours (Serpinb2, Itga3). Notably, Bmp2, a negative regulator of smooth muscle cell proliferation, was also increased at this timepoint. Day 5 after injury was characterized by increase in genes responsible for lipid metabolism. Coagulation after injury was resolved as late as 2 weeks post injury (Thbd), while genes regulating SMC proliferation (Spon1) were still downregulated. At 4 weeks after injury, cytoskeletal and proliferation markers were increased (Actc1, Actg1, Fosb) and immune processes were decreased (Cd36, Cx3cr1, Cd180). Genes regulating proliferation of SMCs were still increased at 6 weeks post injury (Nr4a3, Nr4a1).

      Aberrant SMC and immune cell signaling characterize vessel wall healing in diabetic rats

      The contribution of various major cell types in the vascular wall to vessel healing was assessed from microarray data. Previously recognized classical markers of SMCs, ECs, macrophages, lymphocytes and platelets were queried for each timepoint in GK and Wistar rats and plotted as a heatmap (Supplementary figure 4).
      As expected, the contractile SMC markers decreased consistently in Wistar and GK rats during early phases up to day 5 of vessel healing (Figure 4A). However, in GK rats in later stages of the response, these markers increased significantly more than in Wistar rats (Figure 4A and Supplementary figure 4). Concurrently, markers indicating ECM degradation and ECM production, indicating SMC migration and proliferation, were significantly reduced in GK rats (Supplementary figure 4B). In addition, proliferation markers were also reduced during the remodeling phase in the GK rat vessels (Figure 4E). Taken together, these observations establish that the increase in intimal hyperplasia in GK rats at 4 weeks (Figure 2) is due to the dysfunctional increase in contractile SMCs.
      Figure thumbnail gr4
      Figure 4Aberrant SMC and immune cell signaling characterizes diabetic rat vessel wall healing. Line graph of selected genes from different cell types/cell processes in GK rats compared to Wistar rats through all time points. Green line indicates Wistar, and red line indicates GK rats. (SMC: smooth muscle cells, EC: endothelial cells). Statistical differences were performed using student t-test for each time point between the groups. *, p < 0.05; **, p < 0.01; ***, p < 0.001.
      The endothelial markers Vwf and Podxl, decreased following vascular injury in both Wistar and GK rats, while they gradually increased after 2 weeks indicating a trend towards vascular homeostasis. However, Vwf expression was significantly increased in GK rats compared to that of Wistar rats (Figure 4B). The endothelial progenitor cell marker Cd34 also decreased following injury and recovered at the end of the healing process in Wistar rats. In GK rats, the expression levels decreased at 6 weeks, indicating a defect in the production of endothelial progenitor cells (Figure 4B).
      The macrophage marker Cd68, which peaked at 20 hours in Wistar rat vessels, peaked at 5 days in GK rats, with a significantly increased expression. Cd80, on the other hand, peaked at 5 days in both groups, but was also higher in GK rat vessels. Both these markers fell sharply in GK rats, thereafter, decreasing more significantly than Wistar rats at 4 weeks (Figure 4C). Most lymphocyte genes increased at 20 hours after injury in both GK and Wistar rats (Figure 4D). However, the costimulatory molecule Itgal markedly decreased during 2 weeks in GK rats (Figure 4D).
      Increase in platelet expression was limited to 0 and 20 hours in GK and Wistar rats (Supplementary figure 4A). Interestingly, genes that promote coagulation, such as Serpine1 and Serpinb2 had distinctly higher expression in GK rats at various phases of healing (Supplementary figure 4C). While Serpine1 was increased in uninjured GK rats’ vessels and 4- and 6-weeks injured vessels, Serpinb2 was abnormally increased at 20 hours post injury. The key adhesion molecule Itga3 was higher in uninjured GK rat vessels and was also consistently higher throughout the healing process (Supplementary figure 4C).
      Taken together, these results show that SMC and macrophage gene expression are profoundly affected in GK rats compared to Wistar rats.

      Pathway analyses show that cellular processes central to vascular healing are delayed in diabetic rats

      To get an insight into the consequences of the aberrant signaling in SMCs and immune cells towards overall vessel healing in GK rats, we used the significantly up- and down-regulated genes in GK rats to identify biologically enriched pathways by gene ontology analysis. Certain pathways such as hypoxia signaling, and angiogenesis were enriched immediately following injury and persisted until 4 weeks post injury (Supplementary figure 5). In the early phases of healing (0 and 20 hours), vessels from GK rats were enriched for fatty acid oxidation, hypoxia signaling, cell proliferation and survival and TCA cycle, indicating overall changes in metabolism. Notably, early phase processes of vessel healing such as inflammatory response and integrin signaling were repressed (Figure 5B and Supplementary figure 5B, C). In the intermediate phase, processes such as response to virus, integrin signaling, cell adhesion and migration were enriched, indicating a delayed induction of inflammatory response. However, processes related to cell proliferation were repressed in this phase (Figure 5C and Supplementary figure 4D, E). The late phase of healing was characterized by SMC proliferation, cell survival, response to hormonal signaling and response to mechanical stress. It is important to note that processes related to vessel remodeling such as collagen fibril organization, ECM organization and integrin signaling were still repressed (Figure 5D and Supplementary figure 5F, G). Overall, the pathway analysis corroborated the gene expression changes and confirmed the aberrant induction of inflammatory response and SMC contraction.
      Figure thumbnail gr5
      Figure 5Pathway analyses show that cellular processes central to vascular healing are delayed in diabetic rats. Gene Ontology (GO) enrichment analysis was performed for differentially up- and down-regulated genes from different time points (intact, 20 hours, 2 and 6 weeks) after injury. GK rats are characterized by impaired inflammatory response in the early phase of vascular healing, aberrant ECM remodeling and a delayed but protracted induction of cell proliferation. Green and red bubbles represent up- and down-regulated pathways respectively. The increasing color gradient indicates the increasing p-value. Only significant pathways with p < 0.05 are shown. ERK, Extracellular signal-regulated kinases; RNAP II, RNA polymerase II; ECM, extracellular matrix; LPS, lipopolysaccharide.

      Transcription factor-protein-protein interaction networks (TF-PPI) reveal key pathway modulators in diabetes

      To identify regulatory changes that potentially led to dysregulated vessel healing in GK rats, we performed analysis of transcription factor-protein-protein interaction networks (TF-PPI). The analysis showed that following injury, genes responsible for induction of proliferation were repressed at several levels with upregulation of transcriptional repressors such as Zbtb7a, Ncor1 and Sox17 and with the repression of transcriptional activators such as Ncoa1, Fos and Neurod1 (Supplementary figure 6B). At 20 hours, TFs that induce proliferation and differentiation were upregulated (Ctnnb1, Ep300, Notch1). However, induction of Foxp3 and downregulation of Batf, Stat3 and Smad3 indicated a dampening of inflammatory response at this early stage of vessel wall healing (Figure 6B). Increase in Gata1, Gata2 and Lmo2 expression signaled the beginning of the endothelium recovery, while inflammatory responses were still repressed (Batf, Nfatc1, Smad3, Rxra) after 5 days of injury (Supplementary figure 6D). The immune response to the injury was finally induced at 2 weeks with the increase of Sp1, Cebpb, Pax5 and Smad3. However, transcription factors that promote T-cell differentiation were suppressed through 20 hours (Stat3, Batf) and 5 days (Nfatc1, Batf, Ncoa1) and activated only at 2 weeks (Pax5, Sin3a, Cebpb) and continued through 4 weeks (Sp1, Jun, Nr3c1) and 6 weeks (Batf, Jun). It is important to note that at this point cell proliferation is strongly repressed by the downregulation of many cell cycle genes (Ccnd1, Ccne1, E2f4) and upregulation of transcriptional repressors (Zbtb7a, Atf2) (Figure 6C). At 4 weeks, these immune responses diminished as shown by the activation of Smad3, Jun, Nr3c1 and repression of Stat3 and Stat5a. However, various other cell survival and proliferation markers were also activated (Hif1a, Myc, Atf2, Ep300) (Supplementary figure 6F). This trend continued at 6 weeks as well, since proliferation markers were consistently upregulated (Junb, Jund, Jun, Ep300, Atf3, Ctnnb1) (Figure 6D). In summary, the network of TF-PPIs at each timepoint confirmed that the typical healing responses were delayed in GK rats, and this dysregulation was controlled at the transcriptional level.
      Figure thumbnail gr6
      Figure 6Transcription factor-protein-protein interaction networks (TF-PPI) key pathway modulators in diabetes. A network of significantly modulated TF-PPIs for intact (A) and injured vessels at different time points - 20 hours (B), 2 weeks (C) and 6 weeks (D). Significantly up- and down-regulated genes from each time point comparing GK vs Wistar rats, were used to obtain TF-PPI and this information was fed into STRING database to generate the network. The top 10 up- and 10 down-regulated TFs are shown in the network above. Up- and down-regulated TFs are indicated in green and red nodes respectively. Size of the nodes indicate the levels of p-value. All the interactions were predicted with the adjusted p-value < 0.05.

      Discussion

      In this study, we investigated temporal transcriptomic changes in the vessel wall that drive faulty arterial recovery in diabetic rats. Ultrasound analysis revealed that GK rats had an increased intimal hyperplasia in parallel with exaggerated negative remodeling, which was confirmed by histological analyses. Global transcriptomic analysis of the vessels in GK and Wistar rats revealed changes in expression patterns, which could explain the altered physiological and morphological phenotype.
      The PCA analysis showed that the biggest changes in the transcriptomic profiles of Wistar and GK rats were observed at 20 hours, 5 days, 2 weeks, and 4 weeks, with most profound differences at 4 weeks following injury corresponding to the late stages during the remodeling phase. This was corroborated by the US and histological analysis, where lumen was significantly smaller in GK rats at 4 and 6 weeks after injury compared to Wistar rats.
      On the level of individual genes, classical contractile SMC markers decreased equally in both groups during the acute injury phase, but the increase in the remodeling phase in GK rats was much higher compared to Wistar rats. This observation is strengthened by the appearance of contractile markers and SMC-specific transcription factors as the top upregulated genes at 4 and 6 weeks. Indeed, it is known that luminal narrowing during early part of the healing is due to smooth muscle contraction
      • Clowes A.W.
      • Reidy M.A.
      • Clowes M.M.
      Mechanisms of stenosis after arterial injury.
      . However, the increased SMC contraction in GK rats even after 2 weeks post injury could potentially be the source of the exaggerated negative remodeling. Indeed, previous reports have shown that increased production of reactive oxygen species (ROS) could increase the contractile gene expression in the aorta of GK rats
      • Schmidt A.M.
      • Yan S.D.
      • Wautier J.-L.
      • Stern D.
      Activation of Receptor for Advanced Glycation End Products.
      . At the same time, the expression of MMP-2 and MMP-14 was significantly decreased during the remodeling phase, along with an increase in Collagen type IV and a decrease in Collagen type I. It is well known that the MMP-14 activates MMP-2, which in turn is required to cleave Collagen type IV in order to facilitate SMC motility
      • Tulis D.A.
      Rat carotid artery balloon injury model.
      • PhD S.R.M.
      • et al.
      Transcriptomic profiling of experimental arterial injury reveals new mechanisms and temporal dynamics in vascular healing response.
      • GOTO Y.
      • KAKIZAKI M.
      • MASAKI N.
      Production of Spontaneous Diabetic Rats by Repetition of Selective Breeding.
      . These observations show that impairment in MMP activity may potentially lead to decreased motility and proliferation of SMCs during vascular healing.
      Pathway analysis showed an upregulation of SMC proliferation at 4 weeks, further confirmed by the induction of transcription factors that promote SMC proliferation
      • Wu M.-L.
      • et al.
      Divergent signaling pathways cooperatively regulate TGFβ induction of cysteine-rich protein 2 in vascular smooth muscle cells.
      • Chakraborty R.
      • et al.
      Histone Acetyltransferases p300 and CBP Coordinate Distinct Chromatin Remodeling Programs in Vascular Smooth Muscle Plasticity.
      • Jeong K.
      • et al.
      Nuclear Focal Adhesion Kinase Controls Vascular Smooth Muscle Cell Proliferation and Neointimal Hyperplasia Through GATA4-Mediated Cyclin D1 Transcription.
      from 2 weeks after injury. Our finding is in line with previous reports that intimal hyperplasia in patients with diabetes is phenotypically different and SMCs from diabetic vasculature have greater adhesion, migration, and proliferation potential
      • Wilson S.
      • et al.
      Diabetes and restenosis.
      ,
      • Faries P.L.
      • et al.
      Human vascular smooth muscle cells of diabetic origin exhibit increased proliferation, adhesion, and migration.
      . Interestingly, glucose-lowering agents have been reported to inhibit SMC proliferation and improve restenosis in diabetic patients
      • Lexis C.P.
      • Rahel B.M.
      • Meeder J.G.
      • Zijlstra F.
      • Horst I.C. van der.
      The role of glucose lowering agents on restenosis after percutaneous coronary intervention in patients with diabetes mellitus.
      .
      The endothelial markers decreased, as expected, following injury to vessel wall, and gradually increased in expression after 2 weeks as the vessel wall approached homeostasis, in both GK and Wistar rats. However, vWF (von Willebrand factor), which is also a key molecule for platelet aggregation after tissue injury, was lower in intact vessels of GK rats, suggesting a possible endothelial dysfunction at baseline. As their expression levels increased towards the late phase of healing, there was a significant increase in vWF levels in GK rats at 4 weeks compared to Wistar rats. It is also noteworthy that the GK rats had an increased amount of thrombosis after surgery. On the contrary, the carotid diameter of the GK rats were relatively smaller compared to Wistar rats, which could also have contributed to increased thrombosis. The increase in vWF levels coincided with the specific increase of all platelet markers at 4 weeks in GK rats. Abnormal platelet activation is a feature of diabetes and in the context of restenosis, could lead to thrombosis in diabetic patients
      • Kaur R.
      • Kaur M.
      • Singh J.
      Endothelial dysfunction and platelet hyperactivity in type 2 diabetes mellitus: molecular insights and therapeutic strategies.
      . Indeed, vWF is reported to mediate SMC proliferation in intimal hyperplasia
      • Lagrange J.
      • et al.
      The VWF/LRP4/αVβ3-axis represents a novel pathway regulating proliferation of human vascular smooth muscle cells.
      and it is tempting to speculate that increased vWF expression in the GK rat vessels might be one of the contributing factors to increased SMC proliferation. We found irregular increases in gene expression of molecules controlling cell adhesion and coagulation at various stages of healing. Increase in PAI-1 (plasminogen activator inhibitor type 1), the protein product of the Serpine1 gene, results in thrombosis and SMC proliferation, and has been reported to be associated with hyperinsulinemia
      • McGill J.B.
      • Schneider D.J.
      • Arfken C.L.
      • Lucore C.L.
      • Sobel B.E.
      Factors Responsible for Impaired Fibrinolysis in Obese Subjects and NIDDM Patients.
      . In addition, a decrease in endothelial progenitor cell (EPC) marker, at 6 weeks in GK rats, indicated an impairment in EPC recruitment to the site of injury, a common feature of diabetes-induced dysfunctional neovascularization
      • Tepper O.M.
      • et al.
      Human Endothelial Progenitor Cells From Type II Diabetics Exhibit Impaired Proliferation, Adhesion, and Incorporation Into Vascular Structures.
      . Taken together, these changes in gene expression provide molecular evidence for the impaired reendothelialization and higher rate of thrombosis observed in GK rats.
      We observed an abnormal induction of innate and adaptive immune response during vascular healing in GK rats. Particularly, in the late phases of healing (at 4 weeks), macrophage markers reduced significantly in GK rats compared to Wistar rats. The lymphocyte marker expression did not change in GK rats. However, reduction in Itgal levels but not Cd28 levels shows that in GK rats, the adhesion of T cells to antigen presenting cells seem defective
      • Bachmann M.F.
      • et al.
      Distinct Roles for LFA-1 and CD28 during Activation of Naive T Cells: Adhesion versus Costimulation.
      . In summary, the healing in GK rats is delayed due to a protracted and overactivated innate immune response.
      Restenosis is characterized by a chronic inflammatory response and negative remodeling with SMC proliferation due to delayed reendothelialization. Our observations in this study confirm these features are recapitulated in the balloon catheter injury of carotid arteries in diabetic rats. Future studies into the mechanisms of the dysfunctional build-up of SMCs during the remodeling phase and the aberrant regulation of macrophages throughout the injury could provide further insights into the pathogenesis of restenosis in diabetic patients.

      Limitations and advantages

      It is important to note that, while GK rats generally have moderate increase in blood glucose levels, they also have relatively normal or moderately decreased insulin levels. This is because the changes in insulin levels are caused only by the decrease in β-cell mass and are not driven by obesity
      • Östenson C.‐G.
      • Efendic S.
      Islet gene expression and function in type 2 diabetes; studies in the Goto‐Kakizaki rat and humans.
      . However, GK rats resemble the causal mechanism of type 2 diabetes in humans and thus, have an increased value for studying restenosis in such a context.
      It is also important to note that the study was conducted exclusively in male rats. Studies focused on investigating gender differences in restenosis have found that females have a significantly lower incidence of in-stent restenosis1. In addition, females, in general present lower risk for cardiovascular disease due to the protective effect of estrogen on the vascular wall2. On the other hand, while diabetes significantly increases the risk of both early and in-stent restenosis in females1, inclusion of females to the study would require specific experimental design which is above the scope of this study. More efforts need to be made to elucidate the effect of sex on the vascular healing in diabetes.
      When it comes to some advantages, this study can be seen as global longitudinal encyclopedia of dysregulated arterial healing in diabetes, generating a powerful resource available for future explorations in this field. Moreover, the integration of morphological data from minimally invasive Ultrasound biomicroscopy with histological and transcriptomic data allows for direct correlation between the physiology of the vascular wall and molecular changes occurring in various cell types during the healing, thus, improving the robustness of the observations.

      Conclusions and perspectives

      We systemically analyzed the morphological and physiological changes during vascular healing at various timepoints, together with longitudinal transcriptomic changes and their molecular drivers in diabetic GK rats. A striking difference was observed in the morphology and delayed healing in response to injury between GK and Wistar rats. Transcriptomic analysis revealed that, while Wistar rats had a healing response similar to that reported previously in healthy Sprague Dawley rats
      • PhD S.R.M.
      • et al.
      Transcriptomic profiling of experimental arterial injury reveals new mechanisms and temporal dynamics in vascular healing response.
      , GK rats had an altered gene expression pattern characterized by increased SMC contraction, platelets activation, delayed and prolonged inflammatory response and dysfunctional reendothelialization. Specifically, the impaired control of SMC proliferation was associated with a decrease in lumen area at later time points post injury, while other altered processes could be viewed as contributing factors to SMC and EC dysfunction during vessel healing in diabetes. More dedicated studies about the contribution of hyperglycemia to the SMC contraction and other disturbed pathways found here could be helpful in understanding the development of restenosis, but also to identify novel effective treatment opportunities for diabetic patients following vascular interventions.

      Uncited reference

      • Chettimada S.
      • et al.
      Contractile protein expression is upregulated by reactive oxygen species in aorta of Goto-Kakizaki rat.
      ,
      • Itoh Y.
      Membrane-type matrix metalloproteinases: Their functions and regulations.
      ,
      • Barnes M.J.
      • Farndale R.W.
      Collagens and atherosclerosis.
      ,
      • Orr A.W.
      • et al.
      Molecular Mechanisms of Collagen Isotype-Specific Modulation of Smooth Muscle Cell Phenotype.
      .

      Acknowledgements

      The authors thank prof Ulf Hedin for providing the excellent experimental platform, help funding this project as well as valuable scientific discussion during the preparation of the manuscript. We thank Professor Claes-Göran Östenson generously providing the GK rats for the study. We thank prof Kenneth Caidahl for sharing his expertise and US equipment and for the partial funding of the data analysis.

      Supplementary data

      References

        • Yahagi K.
        • et al.
        Pathology of Human Coronary and Carotid Artery Atherosclerosis and Vascular Calcification in Diabetes Mellitus.
        Arteriosclerosis Thrombosis Vasc Biology. 2017; 37: 191-204
        • Cordero A.
        • et al.
        Comparison of Long-Term Mortality for Cardiac Diseases in Patients With Versus Without Diabetes Mellitus.
        Am J Cardiol. 2016; 117: 1088-1094
        • Giacco F.
        • Brownlee M.
        Oxidative stress and diabetic complications.
        Circulation Research. 2010; 107: 1058-1070
        • Wilson S.
        • et al.
        Diabetes and restenosis.
        Cardiovasc Diabetol. 2022; 21: 23
        • Chamberlain J.
        • et al.
        Interleukin-1β and Signaling of Interleukin-1 in Vascular Wall and Circulating Cells Modulates the Extent of Neointima Formation in Mice.
        Am J Pathology. 2006; 168: 1396-1403
        • Qu D.
        • Liu J.
        • Lau C.W.
        • Huang Y.
        IL‐6 in diabetes and cardiovascular complications.
        Brit J Pharmacol. 2014; 171: 3595-3603
        • Niemann-Jӧnsson A.
        • et al.
        Increased Rate of Apoptosis in Intimal Arterial Smooth Muscle Cells Through Endogenous Activation of TNF Receptors.
        Arteriosclerosis Thrombosis Vasc Biology. 2001; 21: 1909-1914
        • Daemen J.
        • et al.
        Early and late coronary stent thrombosis of sirolimus-eluting and paclitaxel-eluting stents in routine clinical practice: data from a large two-institutional cohort study.
        Lancet. 2007; 369: 667-678
        • Schmidt A.M.
        • Yan S.D.
        • Wautier J.-L.
        • Stern D.
        Activation of Receptor for Advanced Glycation End Products.
        Circ Res. 1999; 84: 489-497
        • Tulis D.A.
        Rat carotid artery balloon injury model.
        Methods Mol Medicine. 2007; 139: 1-30
        • PhD S.R.M.
        • et al.
        Transcriptomic profiling of experimental arterial injury reveals new mechanisms and temporal dynamics in vascular healing response.
        JVS: Vascular Science. 2020; 1: 13-27
        • GOTO Y.
        • KAKIZAKI M.
        • MASAKI N.
        Production of Spontaneous Diabetic Rats by Repetition of Selective Breeding.
        Tohoku J Exp Medicine. 1976; 119: 85-90
        • Östenson C.‐G.
        • Efendic S.
        Islet gene expression and function in type 2 diabetes; studies in the Goto‐Kakizaki rat and humans.
        Diabetes Obes Metabolism. 2007; 9: 180-186
        • Portha B.
        • et al.
        The GK rat beta-cell: A prototype for the diseased human beta-cell in type 2 diabetes?.
        Mol Cell Endocrinol. 2009; 297: 73-85
        • Eriksson L.
        • et al.
        Effects of Linagliptin on Vessel Wall Healing in the Rat Model of Arterial Injury Under Normal and Diabetic Conditions.
        J Cardiovasc Pharm. 2017; 69: 101-109
        • Röhl S.
        • et al.
        Noninvasive in vivo Assessment of the Re‐endothelialization Process Using Ultrasound Biomicroscopy in the Rat Carotid Artery Balloon Injury Model.
        J Ultras Med. 2019; 38: 1723-1731
        • Krejza J.
        • et al.
        Carotid Artery Diameter in Men and Women and the Relation to Body and Neck Size.
        Stroke. 2006; 37: 1103-1105
        • Clowes A.W.
        • Reidy M.A.
        • Clowes M.M.
        Mechanisms of stenosis after arterial injury.
        Laboratory Investigation J Technical Methods Pathology. 1983; 49: 208-215
        • Chettimada S.
        • et al.
        Contractile protein expression is upregulated by reactive oxygen species in aorta of Goto-Kakizaki rat.
        Am J Physiol-heart C. 2014; 306: H214-H224
        • Itoh Y.
        Membrane-type matrix metalloproteinases: Their functions and regulations.
        Matrix Biol. 2015; 44: 207-223
        • Barnes M.J.
        • Farndale R.W.
        Collagens and atherosclerosis.
        Exp Gerontol. 1999; 34: 513-525
        • Orr A.W.
        • et al.
        Molecular Mechanisms of Collagen Isotype-Specific Modulation of Smooth Muscle Cell Phenotype.
        Arteriosclerosis Thrombosis Vasc Biology. 2009; 29: 225-231
        • Wu M.-L.
        • et al.
        Divergent signaling pathways cooperatively regulate TGFβ induction of cysteine-rich protein 2 in vascular smooth muscle cells.
        Cell Commun Signal Ccs. 2014; 12 (22–22)
        • Chakraborty R.
        • et al.
        Histone Acetyltransferases p300 and CBP Coordinate Distinct Chromatin Remodeling Programs in Vascular Smooth Muscle Plasticity.
        Circulation. 2022; 145: 1720-1737
        • Jeong K.
        • et al.
        Nuclear Focal Adhesion Kinase Controls Vascular Smooth Muscle Cell Proliferation and Neointimal Hyperplasia Through GATA4-Mediated Cyclin D1 Transcription.
        Circ Res. 2019; 125: 152-166
        • Faries P.L.
        • et al.
        Human vascular smooth muscle cells of diabetic origin exhibit increased proliferation, adhesion, and migration.
        J Vasc Surg. 2001; 33: 601-607
        • Lexis C.P.
        • Rahel B.M.
        • Meeder J.G.
        • Zijlstra F.
        • Horst I.C. van der.
        The role of glucose lowering agents on restenosis after percutaneous coronary intervention in patients with diabetes mellitus.
        Cardiovasc Diabetol. 2009; 8: 41
        • Kaur R.
        • Kaur M.
        • Singh J.
        Endothelial dysfunction and platelet hyperactivity in type 2 diabetes mellitus: molecular insights and therapeutic strategies.
        Cardiovasc Diabetol. 2018; 17: 121
        • Lagrange J.
        • et al.
        The VWF/LRP4/αVβ3-axis represents a novel pathway regulating proliferation of human vascular smooth muscle cells.
        Cardiovasc Res. 2021; 118: 622-637
        • McGill J.B.
        • Schneider D.J.
        • Arfken C.L.
        • Lucore C.L.
        • Sobel B.E.
        Factors Responsible for Impaired Fibrinolysis in Obese Subjects and NIDDM Patients.
        Diabetes. 1994; 43: 104-109
        • Tepper O.M.
        • et al.
        Human Endothelial Progenitor Cells From Type II Diabetics Exhibit Impaired Proliferation, Adhesion, and Incorporation Into Vascular Structures.
        Circulation. 2002; 106: 2781-2786
        • Bachmann M.F.
        • et al.
        Distinct Roles for LFA-1 and CD28 during Activation of Naive T Cells: Adhesion versus Costimulation.
        Immunity. 1997; 7: 549-557

      Linked Article

      • Toward a targeted approach to diabetes-related peripheral arterial occlusive disease
        JVS-Vascular Science
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          Data on the histologic and molecular patterns of vascular remodeling in diabetes are still lacking. In their study, Narayanan et al1 elegantly compare the arterial response to balloon-mediated carotid injury in diabetic rats with nondiabetic rats and provide a pathophysiologic and transcriptomic database for differences in vascular response without and with insulin resistance. They successfully apply novel bioinformatics tools in this established model of arterial injury to analyze gene expression and regulation associated with balloon injury.
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